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fold change
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5
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14
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4.9k
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Possible ways to select differential expressed genes using DeSeq2 or edgeR
R
deseq2
edger
differential gene expression
fold change
updated 2.0 years ago by
ATpoint
★ 4.1k • written 5.8 years ago by
Beginner
▴ 60
2
votes
7
replies
2.4k
views
About differentially expressed genes that found by edgeR
edgeR
DE analysis
fold change
cpm
updated 7.7 years ago by
Ryan C. Thompson
★ 7.9k • written 7.7 years ago by
Sara
▴ 10
2
votes
4
replies
1.3k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 4.9 years ago by
Aaron Lun
★ 28k • written 4.9 years ago by
ilovesuperheroes1993
• 0
1
vote
2
replies
2.2k
views
diffBind report Fold scale
diffBind
Fold Change
updated 3.0 years ago by
Joe Nicholas
• 0 • written 5.3 years ago by
joseluis.ruiz
• 0
0
votes
1
reply
1.5k
views
Question on fold change calculation for microarray data
logfc
limma
fold change
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
Claudia
▴ 10
1
vote
1
reply
1.4k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown
stattest
fold change
updated 6.2 years ago by
James W. MacDonald
65k • written 6.2 years ago by
ag1805x
▴ 80
0
votes
0
replies
932
views
PROBLEM WITH MFUZZ
mfuzz
fold change
log2
STANDARDISATION
5.9 years ago
prakashpandey1111
• 0
7 results • Page
1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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